Human Metabolome Database Serum Metabolome Version 1.0

The Serum Metabolome database (SMDB) is a freely available electronic database containing detailed information about 4651 small molecule metabolites found in human serum along with 10895 concentration values. The data tables may be sorted and searched by concentration values and ranges. The information includes literature and experimentally derived chemical data, clinical data and molecular/biochemistry data. Each MetaboCard entry contains more than 110 data fields and many of them are hyperlinked to other databases (KEGG, PubChem, MetaCyc, ChEBI, PDB, Swiss-Prot, and GenBank).

The Serum Metabolome database allows users to browse the data in different views, Metabolites, Concentrations and Diseases. Users can see the basic information of the compounds, the concentrations of the compounds and the conditions associated with these concentrations. The Serum Metabolome database also supports extensive text, sequence, chemical structure and relational query searches. The Download button provides links to collected sequence, image and text files associated with the Serum Metabolome Database.

The Serum Metabolome database is supported by David Wishart, Departments of Computing Science & Biological Sciences, University of Alberta.

The Serum Metabolome database is also supported by  The Metabolomics Innovation Centre, a Genome Canada-funded core facility serving the scientific community and industry with world-class expertise and cutting-edge technologies.

Please cite:

Psychogios N, Hau DD, Peng J, Guo AC, Mandal R, Bouatra S, Sinelnikov I, Krishnamurthy R, Eisner R, Gautam B, Young N, Xia J, Knox C, Dong E, Huang P, Hollander Z, Pedersen TL, Smith SR, Bamforth F, Greiner R, McManus B, Newman JW, Goodfriend T, Wishart DS. The human serum metabolome. PLoS One. 2011 Feb 16;6(2):e16957.