Downloads
HMDB Serum Metabolome is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see below). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications.
Wishart DS et al., HMDB: the Human Metabolome Database. Nucleic Acids Res. 2007 Jan;35(Database issue):D521-6.
Protein sequences (in FASTA format)
| Data Set | Description | Download |
|---|---|---|
| Metabolic Enzyme/Macromolecular Interacting Partner Protein Sequences (Updated Jun 24, 2011) | A list of the sequences of all the metabolic enzymes' and macromolecular interacting partners' protein targets |
Non redundant - Redundant |
| Metabolic Enzyme/Macromolecular Interacting Partner DNA Sequences (Updated Jun 24, 2011) | A list of the sequences of all the metabolic enzymes' and macromolecular interacting partners' DNA targets |
Non redundant - Redundant |
MetaboCards (flat files)
| Data Set | Description | Download |
|---|---|---|
| MetaboCards (Updated Jun 24, 2011) | A full set of MetaboCards in a single flat file | Download (unzipped) Download (zipped) |
| MetaboCard Links (Updated Jun 24, 2011) | A simple set of MetaboCards in a single flat file (name, CAS number and link to the metabocard in HMDB) | Download |
Structure Files (SDF)
| Data Set | Description | Download |
|---|---|---|
| SDF Files (Updated Jun 24, 2011) | A full set of small molecule SDF files in a single flat file |
Download (raw text) Download (zipped) |
Spectra Files
| Data Set | Description | Download |
|---|---|---|
| Mass Spectra Image Files (Updated Jun 24, 2011) | A full set of Mass Spectra image files in a single zipped file | Download (zipped) |
| GC/MS Peak Lists (Updated Jun 24, 2011) | A full set of GC/MS data in a single zipped file | Download (zipped) |
| NMR Spectra Peaklist Files (Updated Jun 24, 2011) | A full set of NMR Spectra peaklist files in a single zipped file | Download (zipped) |
| 13C NMR and 1H NMR Spectra Files in HTML format (Updated Jun 24, 2011) | A full set of NMR Spectra image files (predicted and experimental) in a single zipped file |
Download (zipped) |
| Mass Spectra and NMR Spectra Files in HTML format (Updated Jun 24, 2011) | A full set of Mass Spectra and NMR Spectra (predicted and experimental) files in HTML format in a single zipped file |
Download (zipped) |